pynwb.testing.mock.ophys module

pynwb.testing.mock.ophys.mock_OpticalChannel(name: str | None = None, description: str = 'description', emission_lambda: float = 500.0, nwbfile: NWBFile | None = None) → OpticalChannel

pynwb.testing.mock.ophys.mock_ImagingPlane(name: str | None = None, optical_channel: OpticalChannel | None = None, description: str = 'description', device: Device | None = None, excitation_lambda: float = 500.0, indicator: str = 'indicator', location: str = 'unknown', imaging_rate: float = 30.0, manifold=None, conversion: float = 1.0, unit: str = 'meters', reference_frame=None, origin_coords=None, origin_coords_unit: str = 'meters', grid_spacing=None, grid_spacing_unit: str = 'meters', nwbfile: NWBFile | None = None) → ImagingPlane

pynwb.testing.mock.ophys.mock_OnePhotonSeries(name: str | None = None, imaging_plane: ImagingPlane | None = None, data=None, rate: float | None = 50.0, unit: str = 'n.a.', exposure_time=None, binning=None, power=None, intensity=None, format=None, pmt_gain=None, scan_line_rate=None, external_file=None, starting_frame=[0], bits_per_pixel=None, dimension=None, resolution=-1.0, conversion=1.0, offset=0.0, timestamps=None, starting_time=None, comments='no comments', description='no description', control=None, control_description=None, device=None, nwbfile: NWBFile | None = None) → OnePhotonSeries

pynwb.testing.mock.ophys.mock_TwoPhotonSeries(name: str | None = None, imaging_plane: ImagingPlane | None = None, data=None, rate=50.0, unit='n.a.', format=None, field_of_view=None, pmt_gain=None, scan_line_rate=None, external_file=None, starting_frame=[0], bits_per_pixel=None, dimension=None, resolution=-1.0, conversion=1.0, offset=0.0, timestamps=None, starting_time=None, comments='no comments', description='no description', control=None, control_description=None, device=None, nwbfile: NWBFile | None = None) → TwoPhotonSeries

pynwb.testing.mock.ophys.mock_PlaneSegmentation(description: str = 'no description', imaging_plane: ImagingPlane | None = None, name: str | None = None, reference_images=None, n_rois: int = 5, nwbfile: NWBFile | None = None) → PlaneSegmentation

pynwb.testing.mock.ophys.mock_ImageSegmentation(plane_segmentations: Sequence[PlaneSegmentation] | None = None, name: str | None = None, nwbfile: NWBFile | None = None) → ImageSegmentation

pynwb.testing.mock.ophys.mock_RoiResponseSeries(name: str | None = None, data=None, unit: str = 'n.a.', rois=None, resolution=-1.0, conversion=1.0, timestamps=None, starting_time=None, rate=50.0, comments='no comments', description='no description', control=None, control_description=None, n_rois=None, plane_segmentation: PlaneSegmentation | None = None, nwbfile: NWBFile | None = None) → RoiResponseSeries

pynwb.testing.mock.ophys.mock_DfOverF(roi_response_series: RoiResponseSeries | None = None, name: str | None = None, nwbfile: NWBFile | None = None) → DfOverF

pynwb.testing.mock.ophys.mock_Fluorescence(roi_response_series: Sequence[RoiResponseSeries] | None = None, name: str | None = None, nwbfile: NWBFile | None = None) → Fluorescence